NBP Information |
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| NBP type (TF/RBP/DRBP) | 1 |
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| NBP ID | TC000790024_1.01 ; XP_006533785.1 |
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| NBP Name | PREDICTED: RNA binding protein fox-1 homolog 3 isoform X1 |
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| Database | genome |
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| Species | Mus musculus |
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| NBP Family | RRM | ||||
| Coding Sequence | |||||
>TC000790024_1.01|genome|Mus_musculus ATGGCCCAGCCCTACCCCCCTGCCCAGTACCCTCCTCCGCCTCAGAATGGAATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCCACCCAGGACTACTCCGGCCAGACCCCTGTTCCCCCCGAGCACGGCATGACCCTCTACACACCCGCACAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTGGGACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCCAAACGACTACATGTCTCCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGCGGCAAATGTTCGGGCAATTCGGGAAAATTTTAGACGTGGAGATCATTTTTAACGAGCGGGGCTCCAAGGGTTTTGGGTTTGTAACTTTTGAAACTAGCTCAGATGCTGACCGAGCCCGGGAGAAGCTGAATGGGACGATCGTAGAGGGACGGAAAATTGAGGTCAATAATGCCACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAACCCTGTGGTAGGAACAGTCTATGGGCCTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGGGGCCGTGCTGTGTATAATACATTTCGAGCTGCACCACCTCCACCCCCCATTCCAACTTATGGAGCGGCACTGGAGCAAACGCTTGTTAAAATGCCAGTCCCGTGGGCGGGGCTGGCACCGTGCCCCCTCCCTCCTCAGCAGACACCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGGATGGATTTTATGGTGCTGAGATTTATGGAGGCTATGCAGCTTACAGATATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGACAGTTATGGTAGAGTCTATGCCGCTGCTGATCCTTACCATCACACCATCGGCCCCACAGCAACCTACAGCATCGGAACCATGGCTAGCCTCTGCCGAGGAGGGTACAGCCGCTTCACCCCCTACTAG |
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| Protein Sequence | |||||
>TC000790024_1.01|genome|Mus_musculus MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPQADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGTVYGPEFYAVTSFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRVVYQDGFYGAEIYGGYAAYRYAQPAAATAAAYSDSYGRVYAAADPYHHTIGPTATYSIGTMASLCRGGYSRFTPY |
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Supporting Proof |
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|---|---|---|---|---|---|
| Blast to known proteins of CIS-BP or CISBP-RNA | |||||
| Hit Sequence | Rbfox3 |
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| Score | 754.00 |
E-value | 0.0 |
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| Identity | 100.00 |
Percantage of Length Coverage | 100.00 |
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| Binding Domain Identification with PfamScan | |||||
| Domain Name | RRM_1 |
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| Start Pos | 102 |
End Pos | 168 |
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| E-value | 67.4 |
Bit Score | 6.6e-19 |
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| Evidence | 1 |
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| Citations | NA | ||||
Domain Information |
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|---|---|---|---|
| Domain Name | RRM |
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| Domain Start | 102 |
Domain End | 168 |
| Domain Sequence | >TC000790024_1.01-genome-RRM-102-168-Mus_musculus HVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKI |
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| Binding Type | DNA and RNA |
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| Position (Domain sequences are underlined in red ) |
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>TC000790024_1.01|genome|Mus_musculus MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGTQTVPQADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGTVYGPEFYAVTSFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRVVYQDGFYGAEIYGGYAAYRYAQPAAATAAAYSDSYGRVYAAADPYHHTIGPTATYSIGTMASLCRGGYSRFTPY |
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@Copyright 2018 by J. Qin’s lab and K.H. Chu’s lab, Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong.